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SRX12123193: GSM5571653: Ct-MetS_24; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 33.6M spots, 4.2G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)
Study: Zac1 and the Imprinted Gene Network program juvenile NAFLD in response to maternal metabolic syndrome
show Abstracthide Abstract
Background and Aims Within the next decade, non-alcoholic fatty liver disease (NAFLD) is predicted to become the most prevalent cause of childhood liver failure in developed countries. Predisposition to juvenile NAFLD can be programmed during early life in response to maternal metabolic syndrome (MetS), but the underlying mechanisms are poorly understood. We hypothesized that imprinted genes, defined by expression from a single parental allele, play a key role in maternal MetS-induced NAFLD, due to their susceptibility to environmental stressors and their functions in liver homeostasis. We aimed to test this hypothesis and determine the critical periods of susceptibility to maternal MetS. Approach and Results We established a mouse model to compare the effects of MetS during prenatal and postnatal development on NAFLD. Postnatal but not prenatal MetS exposure is associated with histological, biochemical and molecular signatures of hepatic steatosis and fibrosis in juvenile mice. Using RNA-seq, we show that the Imprinted Gene Network (IGN), including its regulator Zac1, is up-regulated and over-represented among differentially expressed genes, consistent with a role in maternal MetS-induced NAFLD. In support of this, activation of the IGN in cultured hepatoma cells by over-expressing Zac1 is sufficient to induce signatures of profibrogenic transformation. Using chromatin immunoprecipitation, we demonstrate that Zac1 binds the TGF-ß1 and COL6A2 promoters, forming a direct pathway between imprinted genes and well-characterized pathophysiological mechanisms of NAFLD. Finally, we show that hepatocyte-specific over-expression of Zac1 is sufficient to drive fibrosis in vivo. Conclusions Our findings identify a novel pathway linking maternal MetS exposure during postnatal development to the programming of juvenile NAFLD, and provide support for the hypothesis that imprinted genes play a central role in metabolic disease programming. Overall design: Liver mRNA profiles from PND21 mice exposed to maternal MetS during prenatal development only (MetS-Ct), postnatal development only (Ct-MetS), throughout development (MetS-MetS) or never (Ct-Ct)
Sample: Ct-MetS_24
SAMN21369184 • SRS10103449 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Livers were removed and flash frozen. RNA was isolated from liver samples using the NucleoSpin kit (Macherey Nagel) and quantified using a Nanodrop 2000. Dnase I treatment was performed as part of the protocol. RNA-seq libraries were constructed using NEBNext Ultra Directional RNA Library Prep Kit and NEBNext Mulitplex Oligos for Illumina (NEB).
Experiment attributes:
GEO Accession: GSM5571653
Links:
Runs: 1 run, 33.6M spots, 4.2G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR1583156033,583,4784.2G1.7Gb2022-02-15

ID:
16042568

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